FLORAL - Fit Log-Ratio Lasso Regression for Compositional Data
Log-ratio Lasso regression for continuous, binary, and survival outcomes with (longitudinal) compositional features. See Fei and others (2024) <doi:10.1016/j.crmeth.2024.100899>.
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openblascppopenmp
6.48 score 16 stars 14 scripts 246 downloadsQuantNorm - Mitigating the Adverse Impact of Batch Effects in Sample Pattern Detection
Modifies the distance matrix obtained from data with batch effects, so as to improve the performance of sample pattern detection, such as clustering, dimension reduction, and construction of networks between subjects. The method has been published in Bioinformatics (Fei et al, 2018, <doi:10.1093/bioinformatics/bty117>). Also available on 'GitHub' <https://github.com/tengfei-emory/QuantNorm>.
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batch-effects
3.65 score 9 stars 9 scripts 196 downloadsSLTCA - SLTCA: Scalable and Robust Latent Trajectory Class Analysis Using Artificial Likelihood
Conduct latent trajectory class analysis with longitudinal observations.
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latent-class-analysislatent-trajectories
2.70 score 157 downloads